Abiogenesis: How plausible are the current models
By Matt Brauer
Posted December 16, 2005
In my last post I mentioned in passing the feature article appearing
in November's issue of PLoS biology.
In that paper, Richard Robinson describes some of the difficulties
faced by researchers into the Origin of
Life. The origin of replicating molecules is a question of intense interest
to biologists because replication is the required (and perhaps sufficient)
condition for subsequent evolution. ("Give biologists a cell and they'll give
you the world" is how Robinson puts it.)
The fundamental breakthrough in Origin of Life (OoL) research came, of
course, from the famous Miller-Urey experiment, in which it was shown that
energy applied to mixtures of inorganic compounds could lead to the formation of
biologically significant molecules. Despite problems that later emerged in
Miller and Urey's model, the fundamental point always remained that
some conditions exist that can result in the spontaneous origin of
organic molecules.
But it's a big long step from organic chemistry to biochemistry. The
existence of biochemical precursors such as nucleotides and amino acids need not
imply the development of replicating RNA and proteins. One of the biggest
hurdles faced by OoL research is the fact that modern life at some point
incorporated the dichotomy between replicating molecules and the
effector molecules they code for. Life (the objection goes) would have
had to develop two distinct but wholly dependent systems
simultaneously. It is safe to say that this scenario is so unlikely
that it is effectively impossible.
Life as we know it is not life as it has always been, however. Jack Szostak's
discovery that RNA needn't be just a medium for the genetic code, but that it
might also itself be an effector molecule, led to one solution to OoL's
chicken-and-egg problem. Szostak postulated that modern biology developed from
an "RNA World". In the precursors to modern cells, RNA was supposed to act
both as replicator and as an enzyme, so that
there was no need for a parallel and simultaneous origin of multiple complex
systems. The Origin of Life via the RNA World is a "genes first" model, in which
the replicator arose and gradually evolved by improving its autocatalytic
replication activity.
The RNA World has problems of it own, of course, and various alternatives
have been proposed to deal wih these. One model, based on "Peptide Nucleic
Acids" (PNA), suffers from many of the same deficiencies that challenge the RNA
World. But there is growing excitement about the idea that metabolic function
might have preceded replicative function. These "metabolism first" models take
recent discoveries about chemistry on surfaces and extrapolates to the
conditions that might have characterized the early earth. The basic idea is that
enzymes act simply by providing surfaces on which favored chemical reactions can
occur. If the surface is what is important, why couldn't an inorganic molecule
provide this just as well. In fact, many modern metabolic enzymes require as
cofactors so-called "Iron-Sulfur clusters". In essence, the enzyme is simply a
device for capturing a minute piece of the original crystalline surface, and
making it available at the right place and time. (My favorite enzyme of the
moment, Aconitase, is one of these Fe-S enzymes).
"Metabolism first" models imagine a porous crystalline structure through
which reactants percolate, and within which polymerized products are captured.
There's a fair bit of handwaving involved in describing the next steps in the
development of life, but the basic idea is nevertheless intriguing.
There are enormous gaps in all Origin of Life models. But these gaps ought to
be expected: we're talking about a singular event that happened 5-6 BYA, after
all. Still, progress in the models continues. And, more importantly, Origin of
Life research has resulted in profound insights into basic biochemistry that
have generated phenomenally productive research programs.
In the end, even if all of our best current models are gross simplifications
(as they most certainly are), their testing and refining have led to a much
deeper understanding of what we mean when we speak of "life".
|